› 6flu

X-ray diffraction
1.78Å resolution

Photorhabdus asymbiotica lectin (PHL) in complex with synthetic C-fucoside

Released:
DOI: 10.2210/pdb6flu/pdb
PDB entry 6flu coloured by chain, front view.
PDB entry 6flu coloured by chain, side view.
PDB entry 6flu coloured by chain, top view.
Source organism: Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949
Primary publication:
Fucosylated inhibitors of recently identified bangle lectin from Photorhabdus asymbiotica.
Paulíková G, Houser J, Kašáková M, Oroszová B, Bertolotti B, Parkan K, Moravcová J, Wimmerová M
OpenAccess logo Sci Rep 9 14904 (2019)
PMID: 31624296

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-111675 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Bulb-type lectin domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 369 amino acids
Theoretical weight: 40.21 KDa
Source organism: Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: C7BLE4 (Residues: 1-369; Coverage: 100%)
Gene name: PAU_00698

Ligands and Environments

3 bound ligands:
Ligand DTK 12 x DTK
Ligand NA 3 x NA
Ligand CL 6 x CL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: BESSY BEAMLINE 14.3
Spacegroup: P3221
Unit cell:
a: 81.94Å b: 81.94Å c: 224.645Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.186 0.184 0.222
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

2 mentions without citation

Molecular Docking Revealed the Potential Anti-Oxidative Stress Mechanism of the Walnut Polypeptide on HT22 Cells.
Zhang et al. (2023)
1 more