› 6g7d

X-ray diffraction
1.35Å resolution

Structure of MeT1 from Mycobacterium hassiacum in complex with SAM and glycerol.

Released:
DOI: 10.2210/pdb6g7d/pdb
PDB entry 6g7d coloured by chain, front view.
PDB entry 6g7d coloured by chain, side view.
PDB entry 6g7d coloured by chain, top view.
Source organism: Mycolicibacterium hassiacum DSM 44199
Primary publication:
Biosynthesis of mycobacterial methylmannose polysaccharides requires a unique 1-O-methyltransferase specific for 3-O-methylated mannosides.
Ripoll-Rozada J, Costa M, Manso JA, Maranha A, Miranda V, Sequeira A, Ventura MR, Macedo-Ribeiro S, Pereira PJB, Empadinhas N
Proc Natl Acad Sci U S A 116 835-844 (2019)
PMID: 30606802

Function and Biology Details

Reaction catalysed: 
S-adenosyl-L-methionine + 3,3'-di-O-methyl-4-alpha-mannobiose = S-adenosyl-L-homocysteine + 1,3,3'-tri-O-methyl-4-alpha-mannobiose
Biochemical function:
Biological process:
Cellular component:
Sequence domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-125564 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
MMP 1-O-methyltransferase Chain: A
Molecule details ›
Chain: A
Length: 231 amino acids
Theoretical weight: 25.45 KDa
Source organism: Mycolicibacterium hassiacum DSM 44199
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: K5B7F3 (Residues: 1-218; Coverage: 100%)
Gene names: C731_4163, MHAS_04405, meT1
Sequence domains: Methyltransferase domain

Ligands and Environments

4 bound ligands:
Ligand SAH 1 x SAH
Ligand GOL 2 x GOL
Ligand MG 2 x MG
Ligand CL 1 x CL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SOLEIL BEAMLINE PROXIMA 2
Spacegroup: P3221
Unit cell:
a: 113.673Å b: 113.673Å c: 41.186Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.143 0.141 0.172
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

5 citation in other articles

Glycosidic α-linked mannopyranose disaccharides: an NMR spectroscopy and molecular dynamics simulation study employing additive and Drude polarizable force fields.
Ruda et al. (2023)
4 more

1 mention without citation

Biosynthesis of mycobacterial methylmannose polysaccharides requires a unique 1-O-methyltransferase specific for 3-O-methylated mannosides.
Ripoll-Rozada et al. (2019)