6idv

X-ray diffraction
2.4Å resolution

Peptide Asparaginyl Ligases from Viola yedoensis

Released:
Source organism: Viola philippica

Function and Biology Details

Biochemical function:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
PDBe Complex ID:
PDB-CPX-105283 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (3 distinct):
Legumain prodomain domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 483 amino acids
Theoretical weight: 53.04 KDa
Source organism: Viola philippica
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: A0A509GV09 (Residues: 1-483; Coverage: 100%)
Sequence domains:

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, FUC
Carbohydrate polymer : NEW Components: NAG
3 bound ligands:
1 modified residue:

Experiments and Validation Details

Entry percentile scores
X-ray source: AUSTRALIAN SYNCHROTRON BEAMLINE MX2
Spacegroup: C2
Unit cell:
a: 156.8Å b: 69.8Å c: 104.48Å
α: 90° β: 110.22° γ: 90°
R-values:
R R work R free
0.219 0.195 0.236
Expression system: Spodoptera frugiperda