› 6nwe

X-ray diffraction
2.7Å resolution

Crystal structure of bovine opsin with beta octyl glucoside bound

Released:
DOI: 10.2210/pdb6nwe/pdb
PDB entry 6nwe coloured by chain, front view.
PDB entry 6nwe coloured by chain, side view.
PDB entry 6nwe coloured by chain, top view.
Source organism: Bos taurus
Entry authors: Eger BT, Morizumi T, Ernst OP

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-136075 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (3 distinct):
Rhodopsin Chain: A
Molecule details ›
Chain: A
Length: 348 amino acids
Theoretical weight: 39.03 KDa
Source organism: Bos taurus
UniProt:
  • Canonical: P02699 (Residues: 1-348; Coverage: 100%)
Gene name: RHO
Sequence domains:
ILENLKDVGLF peptide CT2 Chain: B
Molecule details ›
Chain: B
Length: 11 amino acids
Theoretical weight: 1.26 KDa
Source organism: Bos taurus
Expression system: Not provided

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, BMA
Carbohydrate polymer
3 bound ligands:
Ligand BOG 5 x BOG
Ligand PLM 1 x PLM
Ligand SO4 3 x SO4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 23-ID-B
Spacegroup: R32
Unit cell:
a: 242.169Å b: 242.169Å c: 110.716Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.198 0.196 0.223
Expression system: Not provided

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