› 6onn

X-ray diffraction
1.8Å resolution

Crystal structure of 8-amino-7-oxononanoate synthase from Burkholderia phymatum

Released:
DOI: 10.2210/pdb6onn/pdb
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PDB entry 6onn coloured by chain, front view.
PDB entry 6onn coloured by chain, side view.
PDB entry 6onn coloured by chain, top view.
Source organism: Paraburkholderia phymatum STM815
Entry author: Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Function and Biology Details

Reaction catalysed: 
Pimeloyl-[acyl-carrier protein] + L-alanine = 8-amino-7-oxononanoate + CO(2) + holo-[acyl-carrier protein]
Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-109660 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
8-amino-7-oxononanoate synthase Chains: A, B
Molecule details ›
Chains: A, B
Length: 402 amino acids
Theoretical weight: 42.83 KDa
Source organism: Paraburkholderia phymatum STM815
Expression system: Escherichia coli
UniProt:
  • Canonical: B2JKH6 (Residues: 1-394; Coverage: 100%)
Gene names: Bphy_0172, bioF
Sequence domains: Aminotransferase class I and II
Structure domains:

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 21-ID-F
Spacegroup: P212121
Unit cell:
a: 78.7Å b: 92.58Å c: 125.56Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.166 0.164 0.194
Expression system: Escherichia coli

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Experimental raw data

Links to raw experimental data available for this entry are listed below

Diffraction data related to PDB entry 6onn found at the Integrated Resource for Reproducibility in Macromolecular Crystallography (IRRMC)

Data DOI: 10.18430/m36onn
Datasets: 1
Total size: 1.29Gb
Protein diffraction thumbnail