› 6stn

X-ray diffraction
1.75Å resolution

Three dimensional structure of the giant reed (Arundodonax) lectin (ADL) complex with N-Acetyl glucosamine

Released:
DOI: 10.2210/pdb6stn/pdb
PDB entry 6stn coloured by chain, front view.
PDB entry 6stn coloured by chain, side view.
PDB entry 6stn coloured by chain, top view.
Source organism: Arundo donax
Primary publication:
Structure and properties of the giant reed (Arundo donax) lectin (ADL).
Perduca M, Bovi M, Destefanis L, Nadali D, Fin L, Parolini F, Sorio D, Carrizo ME, Monaco HL
Glycobiology 31 1543-1556 (2021)
PMID: 34192315

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-253341 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Arundo donax Lectin (ADL) Chains: A, B
Molecule details ›
Chains: A, B
Length: 170 amino acids
Theoretical weight: 16.96 KDa
Source organism: Arundo donax

Ligands and Environments

2 bound ligands:
Ligand NAG 2 x NAG
Ligand GOL 1 x GOL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID29
Spacegroup: P65
Unit cell:
a: 127.55Å b: 127.55Å c: 45.6Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.15 0.148 0.19

Quick links

Citations

1 citations in other articles

LectinOracle: A Generalizable Deep Learning Model for Lectin-Glycan Binding Prediction.
Lundstrøm et al. (2022)