6xir

Electron Microscopy
3.2Å resolution

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 76-mer (preferred)
PDBe Complex ID:
PDB-CPX-282615 (preferred)
Entry contents:
70 distinct polypeptide molecules
5 distinct RNA molecules
Macromolecules (75 distinct):
Large ribosomal subunit protein uL2A Chain: A
Molecule details ›
Chain: A
Length: 254 amino acids
Theoretical weight: 27.46 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX45 (Residues: 1-254; Coverage: 100%)
Gene names: RPL2A, RPL5B, YFR031BC, YFR031C-A
Sequence domains:
RPL3 isoform 1 Chain: B
Molecule details ›
Chain: B
Length: 387 amino acids
Theoretical weight: 43.85 KDa
Source organism: Saccharomyces cerevisiae
RPL4A isoform 1 Chain: C
RPL5 isoform 1 Chain: D
Large ribosomal subunit protein eL6A Chain: E
Large ribosomal subunit protein uL30A Chain: F
RPL8A isoform 1 Chain: G
RPL9A isoform 1 Chain: H
RPL10 isoform 1 Chain: I
RPL11B isoform 1 Chain: J
Large ribosomal subunit protein eL13A Chain: L
Large ribosomal subunit protein eL14A Chain: M
Large ribosomal subunit protein eL15A Chain: N
Large ribosomal subunit protein uL13A Chain: O
Large ribosomal subunit protein uL22A Chain: P
Large ribosomal subunit protein eL18A Chain: Q
Large ribosomal subunit protein eL19A Chain: R
Large ribosomal subunit protein eL20A Chain: S
Large ribosomal subunit protein eL21A Chain: T
Large ribosomal subunit protein eL22A Chain: U
Large ribosomal subunit protein uL14A Chain: V
RPL24A isoform 1 Chain: W
Large ribosomal subunit protein uL23 Chain: X
Large ribosomal subunit protein uL24A Chain: Y
Large ribosomal subunit protein eL27A Chain: Z
Small ribosomal subunit protein eS10A Chain: AA
Small ribosomal subunit protein uS17A Chain: AB
Large ribosomal subunit protein uL15 Chain: a
RPL29 isoform 1 Chain: b
Large ribosomal subunit protein eL30 Chain: c
Large ribosomal subunit protein eL31A Chain: d
RPL32 isoform 1 Chain: e
Large ribosomal subunit protein eL33A Chain: f
Large ribosomal subunit protein eL34A Chain: g
Large ribosomal subunit protein uL29A Chain: h
Large ribosomal subunit protein eL36A Chain: i
Large ribosomal subunit protein eL37A Chain: j
RPL38 isoform 1 Chain: k
Large ribosomal subunit protein eL39 Chain: l
RPL41A isoform 1 Chain: n
Large ribosomal subunit protein eL42A Chain: o
Large ribosomal subunit protein eL43A Chain: p
Small ribosomal subunit protein uS2A Chain: q
RPS1A isoform 1 Chain: r
RPS2 isoform 1 Chain: s
RPS3 isoform 1 Chain: t
Small ribosomal subunit protein eS4A Chain: u
Rps5p Chain: v
Small ribosomal subunit protein eS6A Chain: w
Small ribosomal subunit protein eS7A Chain: x
RPS8A isoform 1 Chain: y
Small ribosomal subunit protein uS4A Chain: z
Small ribosomal subunit protein uS15 Chain: AD
Small ribosomal subunit protein uS11B Chain: AE
RPS15 isoform 1 Chain: AF
Small ribosomal subunit protein uS9A Chain: AG
Small ribosomal subunit protein eS17B Chain: AH
Small ribosomal subunit protein uS13A Chain: AI
Small ribosomal subunit protein eS19A Chain: AJ
RPS20 isoform 1 Chain: AK
Small ribosomal subunit protein eS21A Chain: AL
RPS22A isoform 1 Chain: AM
Small ribosomal subunit protein uS12A Chain: AN
Small ribosomal subunit protein eS24A Chain: AO
RPS25A isoform 1 Chain: AP
RPS26B isoform 1 Chain: AQ
Small ribosomal subunit protein eS27A Chain: AR
RPS28A isoform 1 Chain: AS
RPS29A isoform 1 Chain: AT
Small ribosomal subunit protein RACK1 Chain: AV
35S ribosomal RNA Chain: 1
5S ribosomal RNA Chain: 3
5.8S ribosomal RNA Chain: 4
18S Ribosomal RNA Chain: 2
Transfer RNA Chains: AX, AZ

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.2Å
Relevant EMDB volumes: EMD-22198