› 6ab6

Electron Microscopy
3.5Å resolution

Cryo-EM structure of T=3 Penaeus vannamei nodavirus

Released:
DOI: 10.2210/pdb6ab6/pdb
PDB entry 6ab6 coloured by chain, front view.
PDB entry 6ab6 coloured by chain, side view.
PDB entry 6ab6 coloured by chain, top view.
Source organism: Penaeus vannamei nodavirus
Primary publication:
The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Chen NC, Yoshimura M, Miyazaki N, Guan HH, Chuankhayan P, Lin CC, Chen SK, Lin PJ, Huang YC, Iwasaki K, Nakagawa A, Chan SI, Chen CJ
OpenAccess logo Commun Biol 2 72 (2019)
PMID: 30820467
Related structures: EMD-9576

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo 180-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-500567 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Capsid protein Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 368 amino acids
Theoretical weight: 40.26 KDa
Source organism: Penaeus vannamei nodavirus
Expression system: Escherichia coli
UniProt:
  • Canonical: A5H7Q8 (Residues: 1-368; Coverage: 100%)
Sequence domains: Viral coat protein (S domain)

Ligands and Environments

1 bound ligand:
Ligand CA 6 x CA
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.5Å
Relevant EMDB volumes: EMD-9576
Expression system: Escherichia coli

Quick links

Citations

5 citation in other articles

Chimeric virus-like particles (VLPs) designed from shrimp nodavirus (MrNV) capsid protein specifically target EGFR-positive human colorectal cancer cells.
Grataitong et al. (2021)
4 more

2 mentions without citation

The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism.
Chen et al. (2019)
1 more