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GUANOSINE-5'-DIPHOSPHATE

GDP model coordinates provided in the wwPDB chemical component dictionary
GUANOSINE-5'-DIPHOSPHATE in PDB entry 6b0c, assembly 1, side view.
GUANOSINE-5'-DIPHOSPHATE in PDB entry 6b0c, assembly 1, top view.
Formula: C10 H15 N5 O11 P2
Molecular weight: 443 Da
One-letter code: G

Environment details NEW

GDP 501 bound to chain B_26
Ligands and residuesInteractions
 hydrophobic
negatively charged
aromatic
polar
cystein
water
positively charged
other
glycine
bound molecule
glycans (SNFG)
aromatic
clashes
covalent
electrostatic
metal hydrophobic
vdw
GLN11CYS12GLN15ASN99SER138GLY141GLY142THR143GLY144ASN204TYR222ASN226

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The above 2D and 3D (Mol*) views of ligand interactions use quaternary structure derived from the PDB entry.
Please note:
  • Some chain IDs in the tooltip are followed by a number in square brackets. This number corresponds to the operation ID (mmCIF ‘oper_expression’) used to transform the chain.
  • The structure seen in Mol* (3D view) was protonated using ChimeraX.
  • Interactions were calculated using Arpeggio (see details for interaction types).
  • The colour scheme used is consistent with Clustal X.

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