6co2

X-ray diffraction
2.49Å resolution

Structure of an engineered protein (NUDT16TI) in complex with 53BP1 Tudor domains

Released:

Function and Biology Details

Reactions catalysed:
5'-(N(7)-methylguanosine 5'-triphospho)-[mRNA] + H(2)O = N(7)-methylguanosine 5'-diphosphate + 5'-phospho-[mRNA]
IDP + H(2)O = IMP + phosphate
Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
PDBe Complex ID:
PDB-CPX-171429 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
U8 snoRNA-decapping enzyme Chains: A, B
Molecule details ›
Chains: A, B
Length: 196 amino acids
Theoretical weight: 21.54 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q96DE0 (Residues: 1-104, 105-195; Coverage: 100%)
Gene name: NUDT16
Sequence domains: U8 snoRNA-decapping enzyme-like
Structure domains: Nucleoside Triphosphate Pyrophosphohydrolase
TP53-binding protein 1 Chains: C, D
Molecule details ›
Chains: C, D
Length: 123 amino acids
Theoretical weight: 13.94 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q12888 (Residues: 1484-1603; Coverage: 6%)
Gene name: TP53BP1
Sequence domains: Tumour suppressor p53-binding protein-1 Tudor
Structure domains:

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P43212
Unit cell:
a: 73.689Å b: 73.689Å c: 276.448Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.223 0.22 0.27
Expression system: Escherichia coli