6cv4

Electron Microscopy
3.03Å resolution

CryoEM structure of human enterovirus D68 emptied particle (after incubation with low molecular weight heparin)

Released:

Function and Biology Details

Reactions catalysed:
Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1)
Selective cleavage of Gln-|-Gly bond in the poliovirus polyprotein. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly.
Selective cleavage of Tyr-|-Gly bond in picornavirus polyprotein.
NTP + H(2)O = NDP + phosphate
Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero 180-mer (preferred)
PDBe Complex ID:
PDB-CPX-102810 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
viral protein 1 Chain: A
Molecule details ›
Chain: A
Length: 297 amino acids
Theoretical weight: 32.96 KDa
Source organism: enterovirus D68
UniProt:
  • Canonical: A0A0X7Z9B1 (Residues: 565-861; Coverage: 14%)
Sequence domains: Picornavirus coat protein
viral protein 3 Chain: B
Molecule details ›
Chain: B
Length: 247 amino acids
Theoretical weight: 27.17 KDa
Source organism: enterovirus D68
UniProt:
  • Canonical: E9RIT6 (Residues: 1-247; Coverage: 45%)
Sequence domains: picornavirus capsid protein
viral protein 2 Chain: C
Molecule details ›
Chain: C
Length: 248 amino acids
Theoretical weight: 27.6 KDa
Source organism: enterovirus D68
UniProt:
  • Canonical: A0A0X7Z9B1 (Residues: 70-317; Coverage: 11%)
Sequence domains: picornavirus capsid protein

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.03Å
Relevant EMDB volumes: EMD-7635