› 6dm6

X-ray diffraction
2.25Å resolution

Structure of DNA polymerase III subunit beta from Rickettsia conorii in complex with a natural product

Released:
DOI: 10.2210/pdb6dm6/pdb
PDB entry 6dm6 coloured by chain, front view.
PDB entry 6dm6 coloured by chain, side view.
PDB entry 6dm6 coloured by chain, top view.
Source organisms:
Entry author: Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-166604 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Beta sliding clamp Chains: A, B
Molecule details ›
Chains: A, B
Length: 387 amino acids
Theoretical weight: 43.31 KDa
Source organism: Rickettsia conorii str. Malish 7
Expression system: Escherichia coli BL21(DE3)
Natural product peptide Chains: C, D
Molecule details ›
Chains: C, D
Length: 11 amino acids
Theoretical weight: 1.12 KDa
Source organism: Streptomyces muensis
Expression system: Not provided

Ligands and Environments

No bound ligands
3 modified residues:
Ligand MVA 4 x MVA
Ligand MP8 4 x MP8
Ligand NZC 2 x NZC

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 21-ID-F
Spacegroup: P21
Unit cell:
a: 83.86Å b: 41.83Å c: 127.4Å
α: 90° β: 93.92° γ: 90°
R-values:
R R work R free
0.181 0.178 0.235
Expression systems:
  • Escherichia coli BL21(DE3)
  • Not provided

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