6f2s

Electron Microscopy
3.3Å resolution

CryoEM structure of Ageratum Yellow Vein virus (AYVV)

Released:
Source organism: Ageratum yellow vein virus
Related structures: EMD-4174

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:

Structure analysis Details

Assembly composition:
hetero 220-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-119870 (preferred)
Entry contents:
3 distinct polypeptide molecules
2 distinct DNA molecules
Macromolecules (5 distinct):
Capsid protein Chains: A, B, C, D, E, F, G, J, K
Molecule details ›
Chains: A, B, C, D, E, F, G, J, K
Length: 195 amino acids
Theoretical weight: 22.5 KDa
Source organism: Ageratum yellow vein virus
Expression system: Nicotiana benthamiana
UniProt:
  • Canonical: W5RUR4 (Residues: 63-257; Coverage: 76%)
Gene name: V1
Sequence domains: Geminivirus coat protein/nuclear export factor BR1 family
Capsid protein Chain: I
Molecule details ›
Chain: I
Length: 203 amino acids
Theoretical weight: 23.64 KDa
Source organism: Ageratum yellow vein virus
Expression system: Nicotiana benthamiana
UniProt:
  • Canonical: W5RUR4 (Residues: 55-257; Coverage: 79%)
Gene name: V1
Sequence domains: Geminivirus coat protein/nuclear export factor BR1 family
Capsid protein Chain: H
ssDNA loop Chains: L, M, N, O, P, Q, R, T, U, V
ssDNA loop associated with subunit H Chain: S

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.3Å
Relevant EMDB volumes: EMD-4174
Expression system: Nicotiana benthamiana