6g5k

X-ray diffraction
2Å resolution

Crystal structure of the binding domain of Botulinum Neurotoxin type B in complex with human synaptotagmin 1

Released:
Model geometry
Fit model/data

Function and Biology Details

Reaction catalysed:
Limited hydrolysis of proteins of the neuroexocytosis apparatus, synaptobrevin (also known as neuronal vesicle-associated membrane protein, VAMP), synaptosome-associated protein of 25 kDa (SNAP25) or syntaxin. No detected action on small molecule substrates.
Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-145487 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Botulinum neurotoxin B heavy chain Chains: A, B
Molecule details ›
Chains: A, B
Length: 461 amino acids
Theoretical weight: 55.16 KDa
Source organism: Clostridium botulinum
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P10844 (Residues: 857-1291; Coverage: 34%)
Gene name: botB
Sequence domains:
Structure domains:
Synaptotagmin-1 Chains: 33, C
Molecule details ›
Chains: 33, C
Length: 21 amino acids
Theoretical weight: 2.47 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: P21579 (Residues: 33-53; Coverage: 5%)
Gene names: SVP65, SYT, SYT1

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: DIAMOND BEAMLINE I03
Spacegroup: P21
Unit cell:
a: 48.3Å b: 212.79Å c: 52.91Å
α: 90° β: 91.08° γ: 90°
R-values:
R R work R free
0.196 0.194 0.235
Expression systems:
  • Escherichia coli BL21(DE3)
  • Not provided