› 6h2b

Electron Microscopy
3.28Å resolution

Structure of the Macrobrachium rosenbergii Nodavirus

Released:
DOI: 10.2210/pdb6h2b/pdb
PDB entry 6h2b coloured by chain, front view.
PDB entry 6h2b coloured by chain, side view.
PDB entry 6h2b coloured by chain, top view.
Source organism: Macrobrachium rosenbergii nodavirus
Primary publication:
Structure of the Macrobrachium rosenbergii nodavirus: A new genus within the Nodaviridae?
Ho KL, Gabrielsen M, Beh PL, Kueh CL, Thong QX, Streetley J, Tan WS, Bhella D
OpenAccess logo PLoS Biol 16 e3000038 (2018)
PMID: 30346944
Related structures: EMD-0129

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
Sequence domain:

Structure analysis Details

Assembly composition:
homo 180-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-197843 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Capsid protein alpha Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 371 amino acids
Theoretical weight: 41.56 KDa
Source organism: Macrobrachium rosenbergii nodavirus
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: X2FE19 (Residues: 1-371; Coverage: 100%)
Gene name: CP

Ligands and Environments

1 bound ligand:
Ligand CA 6 x CA
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.28Å
Relevant EMDB volumes: EMD-0129
Expression system: Spodoptera frugiperda

Quick links

Citations

2 review citations

Betanodavirus and VER Disease: A 30-year Research Review.
Bandín et al. (2020)
1 more

4 mentions without citation

Structure of the Macrobrachium rosenbergii nodavirus: A new genus within the Nodaviridae?
Ho et al. (2018)
3 more

Experimental raw data

Links to raw experimental data available for this entry are listed below

Electron microscopy data related to PDB entry 6h2b found at the Electron Microscopy Public Image Archive (EMPIAR)

Data DOI: 10.6019/EMPIAR-10203
Datasets: 1
Total size: 130.4Gb
EMPIAR thumbnail