6hm8

X-ray diffraction
2.28Å resolution

Crystal structure of human ACBD3 GOLD domain in complex with 3A protein of enterovirus-D68 (fusion protein)

Released:
Model geometry
Fit model/data

Function and Biology Details

Reactions catalysed:
Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1)
Selective cleavage of Gln-|-Gly bond in the poliovirus polyprotein. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly.
Selective cleavage of Tyr-|-Gly bond in picornavirus polyprotein.
NTP + H(2)O = NDP + phosphate
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-104323 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Golgi resident protein GCP60, N-terminally processed Chain: A
Molecule details ›
Chain: A
Length: 168 amino acids
Theoretical weight: 19.39 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q9H3P7 (Residues: 364-528; Coverage: 31%)
Gene names: ACBD3, GCP60, GOCAP1, GOLPH1
Sequence domains: Golgi-dynamics membrane-trafficking
Genome polyprotein Chain: B
Molecule details ›
Chain: B
Length: 50 amino acids
Theoretical weight: 5.51 KDa
Source organism: enterovirus D68
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A2K9Y515 (Residues: 1454-1498; Coverage: 2%)
Sequence domains: Poliovirus 3A protein like

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: BESSY BEAMLINE 14.1
Spacegroup: C2
Unit cell:
a: 96.361Å b: 55.659Å c: 64.372Å
α: 90° β: 111.89° γ: 90°
R-values:
R R work R free
0.219 0.218 0.233
Expression system: Escherichia coli BL21(DE3)