› 6ipa

X-ray diffraction
2.47Å resolution

C-terminal EMAP II-like domain of p43 refined against twinned data

Released:
DOI: 10.2210/pdb6ipa/pdb
PDB entry 6ipa coloured by chain, front view.
PDB entry 6ipa coloured by chain, side view.
PDB entry 6ipa coloured by chain, top view.
Source organism: Plasmodium vivax
Primary publication:
Crystal structures of the two domains that constitute the Plasmodium vivax p43 protein.
Gupta S, Chhibber-Goel J, Sharma M, Parvez S, Harlos K, Sharma A, Yogavel M
Acta Crystallogr D Struct Biol 76 135-146 (2020)
PMID: 32038044

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-107665 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
tRNA-binding domain-containing protein Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 204 amino acids
Theoretical weight: 22.87 KDa
Source organism: Plasmodium vivax
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: A5K3Y7 (Residues: 206-405; Coverage: 49%)
Gene name: PVX_118375
Sequence domains: Putative tRNA binding domain

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I03
Spacegroup: P212121
Unit cell:
a: 37.17Å b: 146.9Å c: 146.93Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.206 0.202 0.261
Expression system: Escherichia coli BL21

Quick links

Citations

4 citation in other articles

Identification of host tRNAs preferentially recognized by the Plasmodium surface protein tRip.
Cela et al. (2021)
3 more