6jhr

Electron Microscopy
3.68Å resolution

The cryo-EM structure of HAV bound to a neutralizing antibody-F6

Released:

Function and Biology Details

Reactions catalysed:
Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1)
Selective cleavage of Gln-|-Gly bond in the poliovirus polyprotein. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly.
NTP + H(2)O = NDP + phosphate
Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero 300-mer (preferred)
PDBe Complex ID:
PDB-CPX-209375 (preferred)
Entry contents:
5 distinct polypeptide molecules
Macromolecules (5 distinct):
Capsid protein VP1 Chain: A
Molecule details ›
Chain: A
Length: 278 amino acids
Theoretical weight: 30.82 KDa
Source organism: Human hepatitis A virus Hu/Australia/HM175/1976
UniProt:
  • Canonical: P08617 (Residues: 492-769; Coverage: 13%)
Sequence domains: Hepatitis A virus viral protein VP
Capsid protein VP2 Chain: B
Molecule details ›
Chain: B
Length: 222 amino acids
Theoretical weight: 24.9 KDa
Source organism: Human hepatitis A virus Hu/Australia/HM175/1976
UniProt:
  • Canonical: P08617 (Residues: 24-245; Coverage: 10%)
Sequence domains: picornavirus capsid protein
Capsid protein VP3 Chain: C
Molecule details ›
Chain: C
Length: 246 amino acids
Theoretical weight: 27.84 KDa
Source organism: Human hepatitis A virus Hu/Australia/HM175/1976
UniProt:
  • Canonical: P08617 (Residues: 246-491; Coverage: 11%)
Sequence domains: picornavirus capsid protein
FAB Light Chain Chain: D
Molecule details ›
Chain: D
Length: 213 amino acids
Theoretical weight: 23.79 KDa
Source organism: Mus musculus
FAB Heavy Chain Chain: E
Molecule details ›
Chain: E
Length: 221 amino acids
Theoretical weight: 24.21 KDa
Source organism: Mus musculus

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.68Å
Relevant EMDB volumes: EMD-9828