› 6jq8

X-ray diffraction
1.55Å resolution

Crystal structure of HddC from Yersinia pseudotuberculosis complexed with GMP-PN

Released:
DOI: 10.2210/pdb6jq8/pdb
PDB entry 6jq8 coloured by chain, front view.
PDB entry 6jq8 coloured by chain, side view.
PDB entry 6jq8 coloured by chain, top view.
Source organism: Yersinia pseudotuberculosis
Primary publication:
GTP Preference of d-Glycero-α-d-manno-Heptose-1-Phosphate Guanylyltransferase from Yersinia pseudotuberculosis.
Kim S, Kim MS, Jo S, Shin DH
OpenAccess logo Int J Mol Sci 21 (2019)
PMID: 31906195

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-184529 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Nucleotidyl transferase domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 225 amino acids
Theoretical weight: 25.36 KDa
Source organism: Yersinia pseudotuberculosis
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8GJ95 (Residues: 1-225; Coverage: 100%)
Gene name: hddC
Sequence domains: Nucleotidyl transferase

Ligands and Environments

3 bound ligands:
Ligand MG 1 x MG
Ligand GNH 1 x GNH
Ligand CIT 2 x CIT
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PAL/PLS BEAMLINE 11C
Spacegroup: P43
Unit cell:
a: 80.526Å b: 80.526Å c: 53.081Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.208 0.207 0.229
Expression system: Escherichia coli

Quick links

Citations

2 review citations

Abdominal adipose tissue and type 2 diabetic kidney disease: adipose radiology assessment, impact, and mechanisms.
Lu et al. (2024)
1 more

1 mention without citation

GTP Preference of d-Glycero-α-d-manno-Heptose-1-Phosphate Guanylyltransferase from Yersinia pseudotuberculosis.
Kim et al. (2019)