6k3z

X-ray diffraction
3.2Å resolution

Crystal structure of dCas9 in complex with sgRNA and DNA (TGA PAM)

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
PDBe Complex ID:
PDB-CPX-510608 (preferred)
Entry contents:
1 distinct polypeptide molecule
2 distinct DNA molecules
1 distinct RNA molecule
Macromolecules (4 distinct):
CRISPR-associated endonuclease Cas9/Csn1 Chain: B
Molecule details ›
Chain: B
Length: 1368 amino acids
Theoretical weight: 158.59 KDa
Source organism: Streptococcus pyogenes serotype M1
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q99ZW2 (Residues: 1-1368; Coverage: 100%)
Gene names: SPy_1046, cas9, csn1
Sequence domains:
DNA (28-MER) Chain: C
Molecule details ›
Chain: C
Length: 28 nucleotides
Theoretical weight: 8.57 KDa
Source organism: Streptococcus pyogenes
Expression system: Not provided
DNA (5'-D(*AP*AP*AP*TP*GP*AP*TP*AP*TP*TP*G)-3') Chain: D
Molecule details ›
Chain: D
Length: 12 nucleotides
Theoretical weight: 3.71 KDa
Source organism: Streptococcus pyogenes
Expression system: Not provided
RNA (81-MER) Chain: A
Molecule details ›
Chain: A
Length: 83 nucleotides
Theoretical weight: 26.79 KDa
Source organism: Streptococcus pyogenes
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL19U1
Spacegroup: C2
Unit cell:
a: 177.943Å b: 69.058Å c: 190.046Å
α: 90° β: 110.21° γ: 90°
R-values:
R R work R free
0.201 0.197 0.276
Expression systems:
  • Escherichia coli BL21(DE3)
  • Not provided