› 6kd9

X-ray diffraction
2.44Å resolution

Binding pose 1 of 2-CF3 bound AsqJ complex

Released:
DOI: 10.2210/pdb6kd9/pdb
PDB entry 6kd9 coloured by chain, front view.
PDB entry 6kd9 coloured by chain, side view.
PDB entry 6kd9 coloured by chain, top view.
Source organism: Aspergillus nidulans FGSC A4
Primary publication:
Binding pose 1 of 2-CF3 bound AsqJ complex
Liao HJ, Chan NL
J. Am. Chem. Soc. (2020)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-176883 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Iron/alpha-ketoglutarate-dependent dioxygenase asqJ Chains: B, F
Molecule details ›
Chains: B, F
Length: 327 amino acids
Theoretical weight: 36.11 KDa
Source organism: Aspergillus nidulans FGSC A4
Expression system: Escherichia coli
UniProt:
  • Canonical: Q5AR53 (Residues: 109-416; Coverage: 74%)
Gene names: AN9227, asqJ
Sequence domains: Phytanoyl-CoA dioxygenase (PhyH)

Ligands and Environments

3 bound ligands:
Ligand FE 2 x FE
Ligand CV3 2 x CV3
Ligand SIN 2 x SIN
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSRRC BEAMLINE TPS 05A
Spacegroup: P212121
Unit cell:
a: 66.755Å b: 73.352Å c: 121.434Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.221 0.218 0.286
Expression system: Escherichia coli

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