› 6kzw

X-ray diffraction
2.08Å resolution

Crystal structure of YggS family pyridoxal phosphate-dependent enzyme PipY from Fusobacterium nucleatum

Released:
DOI: 10.2210/pdb6kzw/pdb
PDB entry 6kzw coloured by chain, front view.
PDB entry 6kzw coloured by chain, side view.
PDB entry 6kzw coloured by chain, top view.
Source organism: Fusobacterium nucleatum subsp. nucleatum
Entry authors: Chen Y, Wang L, Shang F, Lan J, Liu W, Xu Y

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-185982 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Pyridoxal phosphate homeostasis protein Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 223 amino acids
Theoretical weight: 26.21 KDa
Source organism: Fusobacterium nucleatum subsp. nucleatum
Expression system: Escherichia coli K-12
UniProt:
  • Canonical: Q8RFW9 (Residues: 1-223; Coverage: 100%)
Gene name: FN0561
Sequence domains: Alanine racemase, N-terminal domain

Ligands and Environments

1 bound ligand:
Ligand PO4 3 x PO4
1 modified residue:
Ligand MSE 21 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: PAL/PLS BEAMLINE 5C (4A)
Spacegroup: P21
Unit cell:
a: 37.929Å b: 146.375Å c: 74.128Å
α: 90° β: 93.355° γ: 90°
R-values:
R R work R free
0.174 0.173 0.217
Expression system: Escherichia coli K-12

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