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DIGALACTOSYL DIACYL GLYCEROL (DGDG)

DGD model coordinates provided in the wwPDB chemical component dictionary
DIGALACTOSYL DIACYL GLYCEROL (DGDG) in PDB entry 6l7o, assembly 1, side view.
DIGALACTOSYL DIACYL GLYCEROL (DGDG) in PDB entry 6l7o, assembly 1, top view.
Formula: C51 H96 O15
Molecular weight: 949 Da

Environment details NEW

DGD 403 bound to chain A
Ligands and residuesInteractions
 hydrophobic
negatively charged
aromatic
polar
cystein
water
positively charged
other
glycine
bound molecule
glycans (SNFG)
aromatic
clashes
covalent
electrostatic
metal hydrophobic
vdw
GLU6LEU7GLN8PHE11TYR21TRP29PRO33MET36VAL40THR52PHE119ASN122LEU123LEU124ILE125ILE311LEU315DGD404

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The above 2D and 3D (Mol*) views of ligand interactions use quaternary structure derived from the PDB entry.
Please note:
  • Some chain IDs in the tooltip are followed by a number in square brackets. This number corresponds to the operation ID (mmCIF ‘oper_expression’) used to transform the chain.
  • The structure seen in Mol* (3D view) was protonated using ChimeraX.
  • Interactions were calculated using Arpeggio (see details for interaction types).
  • The colour scheme used is consistent with Clustal X.

Quick links

EBI resources (DGD)