› 6lad

X-ray diffraction
2.7Å resolution

Crystal structure of Amuc_1100 from Akkermansia muciniphila

Released:
DOI: 10.2210/pdb6lad/pdb
Model geometry
Fit model/data
PDB entry 6lad coloured by chain, front view.
PDB entry 6lad coloured by chain, side view.
PDB entry 6lad coloured by chain, top view.
Source organism: Akkermansia muciniphila ATCC BAA-835
Primary publication:
The variable oligomeric state of Amuc_1100 from Akkermansia muciniphila.
Wang J, Xiang R, Wang R, Zhang B, Gong W, Zhang J, Zhang M, Wang M
J Struct Biol 212 107593 (2020)
PMID: 32736072

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
Sequence domain:

Structure analysis Details

Assemblies composition:
monomeric (preferred)
homo trimer
Assembly name:
PDBe Complex ID:
PDB-CPX-109745 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Amuc_1100 Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 296 amino acids
Theoretical weight: 32.35 KDa
Source organism: Akkermansia muciniphila ATCC BAA-835
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: B2UR41 (Residues: 31-317; Coverage: 91%)
Gene name: Amuc_1100

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: SSRF BEAMLINE BL17U
Spacegroup: P212121
Unit cell:
a: 116.657Å b: 123.56Å c: 131.072Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.215 0.213 0.249
Expression system: Escherichia coli BL21

Quick links

Citations

2 review citations

Next-Generation Probiotics and Their Metabolites in COVID-19.
Gautier et al. (2021)
1 more

PDB-REDO

The sliders below show the change in model quality between original PDB entry and the PDB-REDO entry

Model Geometry
 
 
Data not available
DNA/RNA Geometry
 
 
Data not available
Fit model/data
 
 
Data not available
PDB-REDO