› 6m2p

X-ray diffraction
1.13Å resolution

Crystal structure of a NIR-emitting DNA-stabilized Ag16 nanocluster (A10-deletion mutant)

Released:
DOI: 10.2210/pdb6m2p/pdb
PDB entry 6m2p coloured by chain, front view.
PDB entry 6m2p coloured by chain, side view.
PDB entry 6m2p coloured by chain, top view.
Source organism: synthetic construct
Primary publication:
Removal of the A10 adenosine in a DNA-stabilized Ag16 nanocluster.
Cerretani C, Kondo J, Vosch T
RSC Adv 10 23854-23860 (2020)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-120256 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
DNA (5'-D(*CP*AP*CP*CP*TP*AP*GP*CP*G)-3') Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 9 nucleotides
Theoretical weight: 2.7 KDa
Source organism: synthetic construct
Expression system: Not provided

Ligands and Environments

3 bound ligands:
Ligand AG 32 x AG
Ligand CA 2 x CA
Ligand CL 4 x CL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE BL-5A
Spacegroup: P21
Unit cell:
a: 24.211Å b: 33.713Å c: 58.551Å
α: 90° β: 98.11° γ: 90°
R-values:
R R work R free
0.086 0.085 0.096
Expression system: Not provided

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