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Diversity in the type II Natural Killer T cell receptor repertoire and antigen specificity leads to differing CD1d docking strategies

Source organism: Mus musculus
Biochemical function: protein homodimerization activity
Biological process: negative regulation of forebrain neuron differentiation
Cellular component: HFE-transferrin receptor complex

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GO terms

Biochemical function:
Biological process:
Cellular component:

Sequence families

Pfam Protein families (Pfam)
PF07654
Domain description: Immunoglobulin C1-set domain
Occurring in:
  1. Antigen-presenting glycoprotein CD1d1
  2. Beta-2-microglobulin
The deposited structure of PDB entry 6mss contains 1 copy of Pfam domain PF07654 (Immunoglobulin C1-set domain) in Antigen-presenting glycoprotein CD1d1. Showing 1 copy in chain C.
The deposited structure of PDB entry 6mss contains 1 copy of Pfam domain PF07654 (Immunoglobulin C1-set domain) in Beta-2-microglobulin. Showing 1 copy in chain D.

PF16497
Domain description: MHC-I family domain
Occurring in:
  1. Antigen-presenting glycoprotein CD1d1
The deposited structure of PDB entry 6mss contains 1 copy of Pfam domain PF16497 (MHC-I family domain) in Antigen-presenting glycoprotein CD1d1. Showing 1 copy in chain C.

InterPro InterPro annotations
IPR003597
Domain description: Immunoglobulin C1-set
Occurring in:
  1. A11B8.2 NKT TCR beta-chain
  2. Antigen-presenting glycoprotein CD1d1
  3. Beta-2-microglobulin
IPR036179
Domain description: Immunoglobulin-like domain superfamily
Occurring in:
  1. A11B8.2 NKT TCR alpha-chain
  2. A11B8.2 NKT TCR beta-chain
  3. Antigen-presenting glycoprotein CD1d1
  4. Beta-2-microglobulin
IPR013783
Domain description: Immunoglobulin-like fold
Occurring in:
  1. A11B8.2 NKT TCR alpha-chain
  2. A11B8.2 NKT TCR beta-chain
  3. Antigen-presenting glycoprotein CD1d1
  4. Beta-2-microglobulin
IPR007110
Domain description: Immunoglobulin-like domain
Occurring in:
  1. A11B8.2 NKT TCR alpha-chain
  2. A11B8.2 NKT TCR beta-chain
  3. Antigen-presenting glycoprotein CD1d1
  4. Beta-2-microglobulin
IPR013106
Domain description: Immunoglobulin V-set domain
Occurring in:
  1. A11B8.2 NKT TCR alpha-chain
  2. A11B8.2 NKT TCR beta-chain
IPR015707
Domain description: Beta-2-Microglobulin
Occurring in:
  1. Beta-2-microglobulin
IPR015370
Domain description: T-cell receptor alpha chain, constant domain
Occurring in:
  1. A11B8.2 NKT TCR alpha-chain
IPR003599
Domain description: Immunoglobulin subtype
Occurring in:
  1. A11B8.2 NKT TCR alpha-chain
  2. A11B8.2 NKT TCR beta-chain
IPR003006
Domain description: Immunoglobulin/major histocompatibility complex, conserved site
Occurring in:
  1. Beta-2-microglobulin
IPR011162
Domain description: MHC classes I/II-like antigen recognition protein
Occurring in:
  1. Antigen-presenting glycoprotein CD1d1
IPR011161
Domain description: MHC class I-like antigen recognition-like
Occurring in:
  1. Antigen-presenting glycoprotein CD1d1
IPR037055
Domain description: MHC class I-like antigen recognition-like superfamily
Occurring in:
  1. Antigen-presenting glycoprotein CD1d1

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