6myy

Electron Microscopy
3.8Å resolution

Germline VRC01 antibody recognition of a modified clade C HIV-1 envelope trimer, 3 Fabs bound, sharpened map

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero nonamer (preferred)
PDBe Complex ID:
PDB-CPX-126014 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (10 distinct):
Envelope glycoprotein gp160 Chains: A, B, E
Molecule details ›
Chains: A, B, E
Length: 626 amino acids
Theoretical weight: 70.24 KDa
Source organism: Human immunodeficiency virus 1
Expression system: Homo sapiens
UniProt:
  • Canonical: Q2N0S9 (Residues: 30-45, 489-510, 534-663; Coverage: 20%)
  • Canonical: M4Q8P8 (Residues: 42-474, 495-519; Coverage: 69%)
Gene name: env
Sequence domains:
Ig-like domain-containing protein Chains: C, F, L
Molecule details ›
Chains: C, F, L
Length: 229 amino acids
Theoretical weight: 25.01 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: Q6PJF2 (Residues: 7-235; Coverage: 98%)
Gene name: IGK@
Sequence domains:
Ig-like domain-containing protein Chains: D, G, H
Molecule details ›
Chains: D, G, H
Length: 233 amino acids
Theoretical weight: 25.33 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: S6C4S0 (Residues: 20-128, 129-248; Coverage: 88%)
Sequence domains:

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer : NEW Components: NAG, BMA, MAN
Carbohydrate polymer : NEW Components: NAG, BMA, MAN
Carbohydrate polymer : NEW Components: NAG, BMA
Carbohydrate polymer : NEW Components: NAG, BMA, MAN
Carbohydrate polymer : NEW Components: NAG, BMA, MAN
Carbohydrate polymer : NEW Components: NAG, BMA, MAN
1 bound ligand:
1 modified residue:

Experiments and Validation Details

Entry percentile scores
Resolution: 3.8Å
Relevant EMDB volumes: EMD-9294
Expression system: Homo sapiens