6n1d Citations

Spontaneous ribosomal translocation of mRNA and tRNAs into a chimeric hybrid state.

Proc Natl Acad Sci U S A 116 7813-7818 (2019)
Cited: 28 times
EuropePMC logo PMID: 30936299

Abstract

The elongation factor G (EF-G)-catalyzed translocation of mRNA and tRNA through the ribosome is essential for vacating the ribosomal A site for the next incoming aminoacyl-tRNA, while precisely maintaining the translational reading frame. Here, the 3.2-Å crystal structure of a ribosome translocation intermediate complex containing mRNA and two tRNAs, formed in the absence of EF-G or GTP, provides insight into the respective roles of EF-G and the ribosome in translocation. Unexpectedly, the head domain of the 30S subunit is rotated by 21°, creating a ribosomal conformation closely resembling the two-tRNA chimeric hybrid state that was previously observed only in the presence of bound EF-G. The two tRNAs have moved spontaneously from their A/A and P/P binding states into ap/P and pe/E states, in which their anticodon loops are bound between the 30S body domain and its rotated head domain, while their acceptor ends have moved fully into the 50S P and E sites, respectively. Remarkably, the A-site tRNA translocates fully into the classical P-site position. Although the mRNA also undergoes movement, codon-anticodon interaction is disrupted in the absence of EF-G, resulting in slippage of the translational reading frame. We conclude that, although movement of both tRNAs and mRNA (along with rotation of the 30S head domain) can occur in the absence of EF-G and GTP, EF-G is essential for enforcing coupled movement of the tRNAs and their mRNA codons to maintain the reading frame.

Articles - 6n1d mentioned but not cited (1)

  1. Spontaneous ribosomal translocation of mRNA and tRNAs into a chimeric hybrid state. Zhou J, Lancaster L, Donohue JP, Noller HF. Proc Natl Acad Sci U S A 116 7813-7818 (2019)


Reviews citing this publication (9)

  1. Mechanisms and regulation of protein synthesis in mitochondria. Kummer E, Ban N. Nat Rev Mol Cell Biol 22 307-325 (2021)
  2. Translational recoding: canonical translation mechanisms reinterpreted. Rodnina MV, Korniy N, Klimova M, Karki P, Peng BZ, Senyushkina T, Belardinelli R, Maracci C, Wohlgemuth I, Samatova E, Peske F. Nucleic Acids Res 48 1056-1067 (2020)
  3. Mechanisms and biomedical implications of -1 programmed ribosome frameshifting on viral and bacterial mRNAs. Korniy N, Samatova E, Anokhina MM, Peske F, Rodnina MV. FEBS Lett 593 1468-1482 (2019)
  4. The Impact of the Stringent Response on TRAFAC GTPases and Prokaryotic Ribosome Assembly. Bennison DJ, Irving SE, Corrigan RM. Cells 8 E1313 (2019)
  5. The Structural Dynamics of Translation. Korostelev AA. Annu Rev Biochem 91 245-267 (2022)
  6. Genome Expansion by tRNA +1 Frameshifting at Quadruplet Codons. Gamper H, Masuda I, Hou YM. J Mol Biol 434 167440 (2022)
  7. From Recoding to Peptides for MHC Class I Immune Display: Enriching Viral Expression, Virus Vulnerability and Virus Evasion. Atkins JF, O'Connor KM, Bhatt PR, Loughran G. Viruses 13 1251 (2021)
  8. Mechanisms of ribosome recycling in bacteria and mitochondria: a structural perspective. Seely SM, Gagnon MG. RNA Biol 19 662-677 (2022)
  9. The role of molecular chaperone CCT/TRiC in translation elongation: A literature review. Que Y, Qiu Y, Ding Z, Zhang S, Wei R, Xia J, Lin Y. Heliyon 10 e29029 (2024)

Articles citing this publication (18)