› 6o3q

Solution NMR

NMR solution structure of vicilin-buried peptide-8 (VBP-8)

Released:
DOI: 10.2210/pdb6o3q/pdb
PDB entry 6o3q coloured by chain, ensemble of 20 models, front view.
PDB entry 6o3q coloured by chain, ensemble of 20 models, side view.
PDB entry 6o3q coloured by chain, ensemble of 20 models, top view.
Source organism: Solanum lycopersicum
Primary publication:
An Ancient Peptide Family Buried within Vicilin Precursors.
Zhang J, Payne CD, Pouvreau B, Schaefer H, Fisher MF, Taylor NL, Berkowitz O, Whelan J, Rosengren KJ, Mylne JS
ACS Chem Biol 14 979-993 (2019)
PMID: 30973714

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-109158 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Cupin type-1 domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 49 amino acids
Theoretical weight: 6.01 KDa
Source organism: Solanum lycopersicum
Expression system: Not provided
UniProt:
  • Canonical: B0JEU3 (Residues: 87-135; Coverage: 9%)
Gene name: vicilin
Sequence domains: Vicilin N terminal region

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Chemical shift assignment: 65%
Refinement method: simulated annealing
Expression system: Not provided

Quick links

Citations

1 review citation

Plant asparaginyl endopeptidases and their structural determinants of function.
Nonis et al. (2021)
6 other articles

1 mention without citation

Plant Antimicrobial Peptides: Insights into Structure-Function Relationships for Practical Applications.
Slezina et al. (2023)