6oj0

Electron Microscopy
3.7Å resolution

Cryo-EM reconstruction of Sulfolobus polyhedral virus 1 (SPV1)

Released:
Primary publication:
A packing for A-form DNA in an icosahedral virus.
Proc Natl Acad Sci U S A 116 22591-22597 (2019)
PMID: 31636205
Related structures: EMD-20083

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:

Structure analysis Details

Assembly composition:
hetero 2580-mer (preferred)
PDBe Complex ID:
PDB-CPX-103840 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Capsid protein VP4 Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r
Length: 181 amino acids
Theoretical weight: 19.39 KDa
Source organism: Sulfolobus polyhedral virus 1
UniProt:
  • Canonical: A0A1W6I187 (Residues: 1-181; Coverage: 100%)
Gene name: ORF43
Capsid protein VP10 Chain: Z
Molecule details ›
Chain: Z
Length: 187 amino acids
Theoretical weight: 20.62 KDa
Source organism: Sulfolobus polyhedral virus 1
UniProt:
  • Canonical: A0A1W6I162 (Residues: 1-187; Coverage: 100%)
Gene name: ORF27

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.7Å
Relevant EMDB volumes: EMD-20083