› 6ojn

Electron Microscopy
8.6Å resolution

Comparative Model of SGIV Major Coat Protein (MCP) Trimer Based on Cryo-EM Map

Released:
DOI: 10.2210/pdb6ojn/pdb
PDB entry 6ojn coloured by chain, front view.
PDB entry 6ojn coloured by chain, side view.
PDB entry 6ojn coloured by chain, top view.
Source organism: Singapore grouper iridovirus
Primary publication:
Segmentation and Comparative Modeling in an 8.6-Å Cryo-EM Map of the Singapore Grouper Iridovirus.
Pintilie G, Chen DH, Tran BN, Jakana J, Wu J, Hew CL, Chiu W
Structure 27 1561-1569.e4 (2019)
PMID: 31447288
Related structures: EMD-20091

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-178534 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Major capsid protein Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 463 amino acids
Theoretical weight: 50.57 KDa
Source organism: Singapore grouper iridovirus
UniProt:
  • Canonical: Q5YFJ3 (Residues: 1-463; Coverage: 100%)
Gene name: ORF072R
Sequence domains:

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 8.6Å
Relevant EMDB volumes: EMD-20091

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Citations

3 citation in other articles

Particle Morphology of Medusavirus Inside and Outside the Cells Reveals a New Maturation Process of Giant Viruses.
Watanabe et al. (2022)
2 more

3 mentions without citation

Segmentation and Comparative Modeling in an 8.6-Å Cryo-EM Map of the Singapore Grouper Iridovirus.
Pintilie et al. (2019)
2 more