› 6oma

Electron Microscopy
7.2Å resolution

non-decorated head of the phage T5

Released:
DOI: 10.2210/pdb6oma/pdb
PDB entry 6oma coloured by chain, front view.
PDB entry 6oma coloured by chain, side view.
PDB entry 6oma coloured by chain, top view.
Source organism: Escherichia virus T5
Primary publication:
Capsid expansion of bacteriophage T5 revealed by high resolution cryoelectron microscopy.
Huet A, Duda RL, Boulanger P, Conway JF
Proc Natl Acad Sci U S A 116 21037-21046 (2019)
PMID: 31578255
Related structures: EMD-20122

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo 780-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-180259 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Major capsid protein Chains: A, B, C, D, E, F, G, H, I, J, K, L, M
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J, K, L, M
Length: 299 amino acids
Theoretical weight: 32.93 KDa
Source organism: Escherichia virus T5
UniProt:
  • Canonical: Q6QGD8 (Residues: 160-458; Coverage: 65%)
Gene names: D20, ORF138, T5.149, T5p145
Sequence domains: Phage capsid family

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 7.2Å
Relevant EMDB volumes: EMD-20122

Quick links

Citations

1 review citation

Adaptability and specificity: how do proteins balance opposing needs to achieve function?
Wingert et al. (2021)
12 other articles

2 mentions without citation

Antigen self-anchoring onto bacteriophage T5 capsid-like particles for vaccine design.
Vernhes et al. (2024)
1 more