› 6q7p

X-ray diffraction
1.96Å resolution

Crystal structure of OE1.2

Released:
DOI: 10.2210/pdb6q7p/pdb
PDB entry 6q7p coloured by chain, front view.
PDB entry 6q7p coloured by chain, side view.
PDB entry 6q7p coloured by chain, top view.
Source organism: Pyrococcus horikoshii
Primary publication:
Design and evolution of an enzyme with a non-canonical organocatalytic mechanism.
Burke AJ, Lovelock SL, Frese A, Crawshaw R, Ortmayer M, Dunstan M, Levy C, Green AP
Nature 570 219-223 (2019)
PMID: 31132786

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-520779 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Glyceraldehyde 3-phosphate phosphatase Chain: A
Molecule details ›
Chain: A
Length: 242 amino acids
Theoretical weight: 27.64 KDa
Source organism: Pyrococcus horikoshii
Expression system: Escherichia coli
UniProt:
  • Canonical: O58216 (Residues: 1-232; Coverage: 100%)
Gene name: PH0459
Sequence domains: haloacid dehalogenase-like hydrolase

Ligands and Environments

5 bound ligands:
Ligand PGE 1 x PGE
Ligand AC0 1 x AC0
Ligand SO4 1 x SO4
Ligand EDO 1 x EDO
Ligand MG 1 x MG
1 modified residue:
Ligand MHS 1 x MHS

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I03
Spacegroup: P21
Unit cell:
a: 33.98Å b: 71.31Å c: 52.89Å
α: 90° β: 105.28° γ: 90°
R-values:
R R work R free
0.174 0.172 0.213
Expression system: Escherichia coli

Quick links

Citations

9 review citations

Emerging strategies for expanding the toolbox of enzymes in biocatalysis.
Sandoval et al. (2020)
8 more