› 6ror

X-ray diffraction
2.6Å resolution

REP related 18-mer DNA

Released:
DOI: 10.2210/pdb6ror/pdb
PDB entry 6ror coloured by chain, front view.
PDB entry 6ror coloured by chain, side view.
PDB entry 6ror coloured by chain, top view.
Source organism: Cardiobacterium hominis
Primary publication:
Structural variability of CG-rich DNA 18-mers accommodating double T-T mismatches.
Kolenko P, Svoboda J, Černý J, Charnavets T, Schneider B
OpenAccess logo Acta Crystallogr D Struct Biol 76 1233-1243 (2020)
PMID: 33263329

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-120563 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
REP related 18-mer DNA from C. hominis Chain: A
Molecule details ›
Chain: A
Length: 18 nucleotides
Theoretical weight: 5.57 KDa
Source organism: Cardiobacterium hominis
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand SR 2 x SR
1 modified residue:
Ligand BRU 1 x BRU

Experiments and Validation Details

Entry percentile scores
X-ray source: BESSY BEAMLINE 14.2
Spacegroup: P43212
Unit cell:
a: 38.473Å b: 38.473Å c: 90.783Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.238 0.231 0.303
Expression system: Not provided

Quick links

Citations

1 citations in other articles

Conformation-based refinement of 18-mer DNA structures.
Svoboda et al. (2023)

1 mention without citation

Structural variability of CG-rich DNA 18-mers accommodating double T-T mismatches.
Kolenko et al. (2020)