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6th6 › 5MC

5-METHYLCYTIDINE-5'-MONOPHOSPHATE

Modified residue 5MC in PDB entry 6th6, assembly 1, front view.

Modified residue 5MC in PDB entry 6th6, assembly 1, side view.

Modified residue 5MC in PDB entry 6th6, assembly 1, top view.

Formula: C₁₀ H₁₆ N₃ O₈ P

Molecular weight: 337 Da

One-letter code: C

Charge: 0

IUPAC InChI: InChI=1S/C10H16N3O8P/c1-4-2-13(10(16)12-8(4)11)9-7(15)6(14)5(21-9)3-20-22(17,18)19/h2,5-7,9,14-15H,3H2,1H3,(H2,11,12,16)(H2,17,18,19)/t5-,6-,7-,9-/m1/s1

IUPAC InChI key: NJQONZSFUKNYOY-JXOAFFINSA-N

Molecule 1
Molecule 27

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	Chains
	Rfam
	Interaction interfaces

Chains

Chain A (auth Aa)

Chain A

Rfam

Residues mapped to Rfam domains

Interaction interfaces

Residues interacting with Small ribosomal subunit protein uS5 (Q5JJG8)

Residues interacting with Small ribosomal subunit protein uS4 (Q5JJF2)

Residues interacting with Small ribosomal subunit protein uS12 (Q5JE20)

Residues interacting with Small ribosomal subunit protein eS4 (Q5JJG0)

Residues interacting with Small ribosomal subunit protein eS6 (Q5JDK8)

Residues interacting with Small ribosomal subunit protein eS8 (Q5JGF3)

Residues interacting with Small ribosomal subunit protein uS17 (Q5JDH9)

Residues interacting with Large ribosomal subunit protein eL19 (Q5JJG6)

Residues interacting with Small ribosomal subunit protein eS24 (Q5JIY8)

Residues interacting with Small ribosomal subunit protein uS3 (Q5JDH5)

Residues interacting with Small ribosomal subunit protein uS8 (Q5JJG3)

Residues interacting with Small ribosomal subunit protein eS32 (Q5JEV0)

Residues interacting with Small ribosomal subunit protein uS15 (Q5JGJ4)

Residues interacting with Small ribosomal subunit protein eS27 (Q5JE50)

Residues interacting with Small ribosomal subunit protein eS1 (Q5JGM4)

Residues interacting with Large ribosomal subunit protein eL43 (Q5JDM6)

Residues interacting with Small ribosomal subunit protein uS11 (Q5JJF3)

Residues interacting with Large ribosomal subunit protein uL2 (Q5JDH2)

Residues interacting with Small ribosomal subunit protein uS2 (Q5JJD2)

Residues interacting with Double zinc ribbon protein TK0111 (Q5JFE2)

Residues interacting with Small ribosomal subunit protein uS9 (Q5JJE2)

Residues interacting with Small ribosomal subunit protein eS28 (Q5JGR4)

Residues interacting with Small ribosomal subunit protein uS7 (Q5JE04)

Residues interacting with Small ribosomal subunit protein eS19 (Q5JGN5)

Residues interacting with Small ribosomal subunit protein uS13 (Q5JJF1)

Residues interacting with Small ribosomal subunit protein uS19 (Q5JDH3)

Residues interacting with Small ribosomal subunit protein uS10 (Q5JFZ5)

Residues interacting with Small ribosomal subunit protein uS14 (Q5JJG2)

Residues interacting with Small ribosomal subunit protein eS17 (Q5JDC7)

Residues interacting with Large ribosomal subunit protein uL14 (Q5JJF8)

Residues interacting with Large ribosomal subunit protein eL24 (Q5JGR5)

Sequence conservation

Amino acid probabilities The amino acid probabilities are calculated using HMM profiles based on multiple sequence alignments. Click to see more details...

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Amino acid properties

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6th6:

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PDB › 6th6 › 5MC

5-METHYLCYTIDINE-5'-MONOPHOSPHATE

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6th6 › 5MC