› 6tva

X-ray diffraction
1.74Å resolution

Crystal structure of the haemagglutinin from a transmissible H10N7 seal influenza virus isolated in Netherland in complex with avian receptor analogue, 3'-SLN

Released:
DOI: 10.2210/pdb6tva/pdb
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PDB entry 6tva coloured by chain, front view.
PDB entry 6tva coloured by chain, side view.
PDB entry 6tva coloured by chain, top view.
Source organism: Influenza A virus
Primary publication:
Hemagglutinin Traits Determine Transmission of Avian A/H10N7 Influenza Virus between Mammals.
Herfst S, Zhang J, Richard M, McBride R, Lexmond P, Bestebroer TM, Spronken MIJ, de Meulder D, van den Brand JM, Rosu ME, Martin SR, Gamblin SJ, Xiong X, Peng W, Bodewes R, van der Vries E, Osterhaus ADME, Paulson JC, Skehel JJ, Fouchier RAM
Cell Host Microbe 28 602-613.e7 (2020)
PMID: 33031770

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero hexamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-100836 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (4 distinct):
Hemagglutinin Chains: A, C, E
Molecule details ›
Chains: A, C, E
Length: 320 amino acids
Theoretical weight: 34.91 KDa
Source organism: Influenza A virus
Expression system: unidentified baculovirus
UniProt:
  • Canonical: A0A0A7HR51 (Residues: 10-327; Coverage: 58%)
Gene name: HA
Sequence domains: Haemagglutinin
Hemagglutinin Chains: B, D, F
Molecule details ›
Chains: B, D, F
Length: 172 amino acids
Theoretical weight: 19.76 KDa
Source organism: Influenza A virus
Expression system: unidentified baculovirus
UniProt:
  • Canonical: A0A0A7HR51 (Residues: 333-504; Coverage: 31%)
Gene name: HA
Sequence domains: Haemagglutinin

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, GAL, SIA
Carbohydrate polymer
Carbohydrate polymer : NEW Components: NAG, BMA, MAN
Carbohydrate polymer
1 bound ligand:
Ligand NAG 5 x NAG
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: DIAMOND BEAMLINE I03
Spacegroup: P21
Unit cell:
a: 64.58Å b: 214.96Å c: 77.31Å
α: 90° β: 98.94° γ: 90°
R-values:
R R work R free
0.202 0.201 0.215
Expression system: unidentified baculovirus

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Citations

8 review citations

Hemagglutinin Stability and Its Impact on Influenza A Virus Infectivity, Pathogenicity, and Transmissibility in Avians, Mice, Swine, Seals, Ferrets, and Humans.
Russell CJ. (2021)
7 more

1 mention without citation

Hemagglutinin Traits Determine Transmission of Avian A/H10N7 Influenza Virus between Mammals.
Herfst et al. (2020)

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