› 6v49

X-ray diffraction
2.5Å resolution

The crystal structure of hemagglutinin from A/wedge-tailed shearwater/Western Australia/2576/1979 (H15N9)

Released:
DOI: 10.2210/pdb6v49/pdb
PDB entry 6v49 coloured by chain, front view.
PDB entry 6v49 coloured by chain, side view.
PDB entry 6v49 coloured by chain, top view.
Source organism: Influenza A virus (A/wedge-tailed shearwater/Western Australia/2576/1979(H15N9))
Primary publication:
Molecular characterization and three-dimensional structures of avian H8, H11, H14, H15 and swine H4 influenza virus hemagglutinins
Yang H, Carney PJ, Chang J, Stevens J
Heliyon 6 e04068- (2020)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero hexamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-173126 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (3 distinct):
Hemagglutinin Chains: A, C, E
Molecule details ›
Chains: A, C, E
Length: 332 amino acids
Theoretical weight: 36.32 KDa
Source organism: Influenza A virus (A/wedge-tailed shearwater/Western Australia/2576/1979(H15N9))
Expression system: Trichoplusia ni
UniProt:
  • Canonical: Q20ND8 (Residues: 19-349; Coverage: 58%)
Gene name: HA
Sequence domains: Haemagglutinin
Hemagglutinin Chains: B, D, F
Molecule details ›
Chains: B, D, F
Length: 174 amino acids
Theoretical weight: 20.22 KDa
Source organism: Influenza A virus (A/wedge-tailed shearwater/Western Australia/2576/1979(H15N9))
Expression system: Trichoplusia ni
UniProt:
  • Canonical: Q20ND8 (Residues: 350-523; Coverage: 31%)
Gene name: HA
Sequence domains: Haemagglutinin

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer
1 bound ligand:
Ligand NAG 3 x NAG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 22-ID
Spacegroup: C2
Unit cell:
a: 108.667Å b: 101.38Å c: 163.27Å
α: 90° β: 90.74° γ: 90°
R-values:
R R work R free
0.232 0.23 0.265
Expression system: Trichoplusia ni

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