6vft

X-ray diffraction
3.71Å resolution

Crystal structure of human delta protocadherin 17 EC1-EC4

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-279326 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (6 distinct):
Protocadherin-17 Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 453 amino acids
Theoretical weight: 48.95 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: O14917 (Residues: 18-464; Coverage: 39%)
Gene names: PCDH17, PCDH68, PCH68
Sequence domains:

Ligands and Environments

Carbohydrate polymer : NEW Components: MAN, NAG, FUC, BMA
Carbohydrate polymer : NEW Components: NAG, FUC
Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer : NEW Components: NAG, FUC, BMA
Carbohydrate polymer : NEW Components: NAG, BMA
3 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 24-ID-E
Spacegroup: C2
Unit cell:
a: 214.55Å b: 105.838Å c: 101.403Å
α: 90° β: 101.038° γ: 90°
R-values:
R R work R free
0.255 0.253 0.3
Expression system: Homo sapiens