6vlr

Electron Microscopy
4.42Å resolution

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero tetradecamer (preferred)
PDBe Complex ID:
PDB-CPX-212163 (preferred)
Entry contents:
6 distinct polypeptide molecules
Macromolecules (11 distinct):
Envelope glycoprotein gp160 Chains: A, G, H
Molecule details ›
Chains: A, G, H
Length: 475 amino acids
Theoretical weight: 53.27 KDa
Source organism: Human immunodeficiency virus 1
Expression system: Homo sapiens
UniProt:
  • Canonical: Q2N0S6 (Residues: 30-504; Coverage: 55%)
Gene name: env
Sequence domains: Envelope glycoprotein GP120
Transmembrane protein gp41 Chains: B, I, J
Molecule details ›
Chains: B, I, J
Length: 153 amino acids
Theoretical weight: 17.18 KDa
Source organism: Human immunodeficiency virus 1
Expression system: Homo sapiens
UniProt:
  • Canonical: Q2N0S6 (Residues: 509-661; Coverage: 18%)
Gene name: env
Sequence domains: Retroviral envelope protein
PGT122 Fab Heavy Chain Chains: C, D, E
PGT122 Fab Light Chain Chains: K, L, M
RM20E1 Fab Heavy Chain Chain: F
RM20E1 Fab Kappa Chain Chain: N

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer : NEW Components: NAG, BMA, MAN
Carbohydrate polymer : NEW Components: NAG, BMA
Carbohydrate polymer : NEW Components: NAG, BMA, MAN
Carbohydrate polymer : NEW Components: NAG, BMA, MAN
1 bound ligand:
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this EM entry.
Resolution: 4.42Å
Relevant EMDB volumes: EMD-21232
Expression system: Homo sapiens