6voy

Electron Microscopy
3.7Å resolution

Function and Biology Details

Reactions catalysed:
Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)
Endonucleolytic cleavage to 5'-phosphomonoester.
Biochemical function:
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
hetero dodecamer (preferred)
PDBe Complex ID:
PDB-CPX-120781 (preferred)
Entry contents:
2 distinct polypeptide molecules
3 distinct DNA molecules
Macromolecules (5 distinct):
DNA-binding protein 7d; Integrase Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 390 amino acids
Theoretical weight: 43.65 KDa
Source organisms: Expression system: Escherichia coli
UniProt:
  • Canonical: P39476 (Residues: 1-64; Coverage: 100%)
  • Canonical: P14078 (Residues: 1168-1462; Coverage: 20%)
Gene names: SSO10610, gag-pro-pol, sso7d, sso7d-1
Sequence domains:
Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform Chains: E, F
Molecule details ›
Chains: E, F
Length: 343 amino acids
Theoretical weight: 40.36 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q13362 (Residues: 30-372; Coverage: 66%)
Gene names: KIAA0044, PPP2R5C
Sequence domains: Protein phosphatase 2A regulatory B subunit (B56 family)
DNA (5'-D(P*AP*CP*AP*CP*AP*CP*TP*TP*GP*AP*CP*TP*AP*GP*GP*GP*TP*G)-3') Chains: I, L
Molecule details ›
Chains: I, L
Length: 49 nucleotides
Theoretical weight: 15.07 KDa
DNA (25-MER) Chains: J, M
Molecule details ›
Chains: J, M
Length: 25 nucleotides
Theoretical weight: 7.61 KDa
DNA (5'-D(P*AP*CP*AP*CP*AP*CP*TP*TP*GP*AP*CP*TP*AP*GP*GP*GP*TP*G)-3') Chains: K, N
Molecule details ›
Chains: K, N
Length: 20 nucleotides
Theoretical weight: 6.2 KDa

Ligands and Environments

2 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.7Å
Relevant EMDB volumes: EMD-21301
Expression system: Escherichia coli