Ligands and environments ‹ 6vz4 ‹ Protein Data Bank in Europe (PDBe)

4 bound ligands:

MG 1501(K) Environment details ›

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Jmol applet _PDBE_JMOL__893473988450595__ ready

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/corescript.z.js

script 1 started

FileManager.getAtomSetCollectionFromFile(https://www.ebi.ac.uk/pdbe/entry-files/download/6vz4.cif)

FileManager opening 1 https://www.ebi.ac.uk/pdbe/entry-files/download/6vz4.cif

The Resolver thinks MMCif

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/adapter/readers/cif/MMCifReader.js

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/adapter/readers/cif/CifReader.js

-- required by J.adapter.readers.cif.MMCifReader

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/JU/CifDataParser.js

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/corebio.z.js

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/render/MeshRenderer.js

-- required by J.renderbio.BioShapeRenderer

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/shape/Mesh.js

TITLE: Structural insights into assembly and function of the RSC chromatin remodeling complex.

Setting space group name to HM:P 1

found biomolecule 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

Time for openFile(*6vz4): 6542 ms

reading 239500 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

10 models in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Babel

Default Van der Waals type for model set to Jmol

239500 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

TITLE: Structural insights into assembly and function of the RSC chromatin remodeling complex.

found biomolecule 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R

10 models

Script completed

Jmol script terminated

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script 2 started

antialiasDisplay = true

antialiasTranslucent = true

debugScript = false

showScript = 0

chainCaseSensitive = true

measurementUnits = "angstroms"

autobond = true

forceAutoBond = true

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-- required by J.shapesurface.Isosurface

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s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/JU/ContactPair.js

contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 11

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/jvxl/readers/IsoIntersectReader.js

Contacts: 6 with net volume 0.6832908375811696 A^3

RasMol pseudo-hbond calculation

0 hydrogen bonds

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/coretext.z.js

Script completed

Jmol script terminated

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-- required by JV.OutputManagerJS

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-- required by javajs.img.Huffman

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-- required by javajs.img.ImageEncoder

script 3 started

antialiasDisplay = true

antialiasTranslucent = true

debugScript = false

showScript = 0

chainCaseSensitive = true

measurementUnits = "angstroms"

autobond = true

forceAutoBond = true

contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 4

Contacts: 0

RasMol pseudo-hbond calculation

0 hydrogen bonds

Script completed

Jmol script terminated

script 4 started

antialiasDisplay = true

antialiasTranslucent = true

debugScript = false

showScript = 0

chainCaseSensitive = true

measurementUnits = "angstroms"

autobond = true

forceAutoBond = true

contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 10

Contacts: 9 with net volume 0.6077171547986461 A^3

RasMol pseudo-hbond calculation

0 hydrogen bonds

Script completed

Jmol script terminated

script 5 started

antialiasDisplay = true

antialiasTranslucent = true

debugScript = false

showScript = 0

chainCaseSensitive = true

measurementUnits = "angstroms"

autobond = true

forceAutoBond = true

contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 1

Contacts: 0

RasMol pseudo-hbond calculation

0 hydrogen bonds

Script completed

Jmol script terminated

script 6 started

Script completed

Jmol script terminated

script 7 started

Script completed

Jmol script terminated

script 8 started

Script completed

Jmol script terminated

ADP 1502(K) Environment details ›

BEF 1503(K) Environment details ›

ATP 501(L) Environment details ›

No modified residues

PDBe › 6vz4 › Ligands and Environments

4 bound ligands:

Quick links

6vz4 › Ligands and Environments