6wxe

Electron Microscopy
3.4Å resolution

Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Upright conformation

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 39-mer (preferred)
PDBe Complex ID:
PDB-CPX-109486 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
Outer capsid protein VP4 Chains: 1, 2, 3
Molecule details ›
Chains: 1, 2, 3
Length: 776 amino acids
Theoretical weight: 86.66 KDa
Source organism: Simian rotavirus A strain RRV
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: G0YZG6 (Residues: 1-776; Coverage: 100%)
Sequence domains:
Intermediate capsid protein VP6 Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R
Length: 397 amino acids
Theoretical weight: 44.93 KDa
Source organism: Simian rotavirus A strain RRV
UniProt:
  • Canonical: B2BN53 (Residues: 1-397; Coverage: 100%)
Sequence domains: Rotavirus major capsid protein VP6
Outer capsid glycoprotein VP7 Chains: a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r
Molecule details ›
Chains: a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r
Length: 326 amino acids
Theoretical weight: 37.14 KDa
Source organism: Simian rotavirus A strain RRV
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: P12476 (Residues: 1-326; Coverage: 100%)
Sequence domains: Glycoprotein VP7

Ligands and Environments

2 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.4Å
Relevant EMDB volumes: EMD-21955
Expression system: Spodoptera frugiperda