6x66

Electron Microscopy
4.2Å resolution

Legionella pneumophila dDot T4SS OMC

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 117-mer (preferred)
PDBe Complex ID:
PDB-CPX-235715 (preferred)
Entry contents:
6 distinct polypeptide molecules
Macromolecules (6 distinct):
Type IV secretion system DotC family protein Chains: AC, BC, CC, DC, EC, FC, GC, HC, IC, JC, KC, LC, MC
Molecule details ›
Chains: AC, BC, CC, DC, EC, FC, GC, HC, IC, JC, KC, LC, MC
Length: 303 amino acids
Theoretical weight: 34.16 KDa
Source organism: Legionella pneumophila
UniProt:
  • Canonical: O52184 (Residues: 1-303; Coverage: 100%)
Gene names: C3928_14230, F7Z80_08005, F9V49_09090, I8572_002175, I8Y58_002455, I8Z60_002260, JBJ86_00865, KLD42_000197, dotC
Sequence domains: Type IV secretory system, conjugal DNA-protein transfer
Type IVB secretion system lipoprotein DotD Chains: AD, Ad, BD, Bd, CD, Cd, DD, Dd, ED, Ed, FD, Fd, GD, Gd, HD, Hd, ID, Id, JD, Jd, KD, Kd, LD, Ld, MD, Md
Molecule details ›
Chains: AD, Ad, BD, Bd, CD, Cd, DD, Dd, ED, Ed, FD, Fd, GD, Gd, HD, Hd, ID, Id, JD, Jd, KD, Kd, LD, Ld, MD, Md
Length: 163 amino acids
Theoretical weight: 17.86 KDa
Source organism: Legionella pneumophila
UniProt:
  • Canonical: O52183 (Residues: 1-163; Coverage: 100%)
Gene names: DIZ50_08440, JBJ86_00860, JBK99_04205, dotD
Sequence domains: DotD protein
Type IV secretion protein IcmK Chains: AH, BH, CH, DH, EH, FH, GH, HH, IH, JH, KH, LH, MH
Molecule details ›
Chains: AH, BH, CH, DH, EH, FH, GH, HH, IH, JH, KH, LH, MH
Length: 361 amino acids
Theoretical weight: 38.96 KDa
Source organism: Legionella pneumophila
OmpA-like domain-containing protein Chains: AK, BK, CK, DK, EK, FK, GK, HK, IK, JK, KK, LK, MK
Molecule details ›
Chains: AK, BK, CK, DK, EK, FK, GK, HK, IK, JK, KK, LK, MK
Length: 189 amino acids
Theoretical weight: 21.1 KDa
Source organism: Legionella pneumophila
UniProt:
  • Canonical: O53086 (Residues: 1-189; Coverage: 100%)
Gene names: DIZ50_13040, ERS253263_00465, JBJ86_08710, JBK99_08030, NCTC12000_00581, O6C86_13655, icmN, lphA, yiaD_1
Sequence domains: OmpA family
Type IV secretion system unknown protein fragment Chains: AX, AY, AZ, BX, BY, BZ, CX, CY, CZ, DX, DY, DZ, EX, EY, EZ, FX, FY, FZ, GX, GY, GZ, HX, HY, HZ, IX, IY, IZ, JX, JY, JZ, KX, KY, KZ, LX, LY, LZ, MX, MY, MZ
Molecule details ›
Chains: AX, AY, AZ, BX, BY, BZ, CX, CY, CZ, DX, DY, DZ, EX, EY, EZ, FX, FY, FZ, GX, GY, GZ, HX, HY, HZ, IX, IY, IZ, JX, JY, JZ, KX, KY, KZ, LX, LY, LZ, MX, MY, MZ
Length: 330 amino acids
Theoretical weight: 28.1 KDa
Source organism: Legionella pneumophila
OmpA-like domain-containing protein Chains: AA, BA, CA, DA, EA, FA, GA, HA, IA, JA, KA, LA, QA
Molecule details ›
Chains: AA, BA, CA, DA, EA, FA, GA, HA, IA, JA, KA, LA, QA
Length: 249 amino acids
Theoretical weight: 27.58 KDa
Source organism: Legionella pneumophila
UniProt:
  • Canonical: Q5ZXS4 (Residues: 1-249; Coverage: 100%)
Gene name: lpg0657
Sequence domains: OmpA family

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 4.2Å
Relevant EMDB volumes: EMD-22071