› 6xs7

X-ray diffraction
1.58Å resolution

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-274282 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Vacuolar protein sorting-associated protein 29 Chain: A
Molecule details ›
Chain: A
Length: 192 amino acids
Theoretical weight: 21.64 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q9UBQ0 (Residues: 1-182; Coverage: 100%)
Gene names: DC15, DC7, MDS007, VPS29
Sequence domains: Calcineurin-like phosphoesterase superfamily domain
48V-DTY-THR-THR-ILE-TYR-TRP-THR-PRO-LEU-GLY-THR-PHE-PRO-ARG-ILE-ARG Chain: B
Molecule details ›
Chain: B
Length: 17 amino acids
Theoretical weight: 2.15 KDa
Source organism: synthetic construct
Expression system: Not provided

Ligands and Environments

2 bound ligands:
Ligand GOL 2 x GOL
Ligand FMT 1 x FMT
1 modified residue:
Ligand DTY 1 x DTY

Experiments and Validation Details

Entry percentile scores
X-ray source: AUSTRALIAN SYNCHROTRON BEAMLINE MX2
Spacegroup: P21212
Unit cell:
a: 38.06Å b: 144.01Å c: 43.02Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.179 0.178 0.191
Expression systems:
  • Escherichia coli BL21(DE3)
  • Not provided

Quick links

Citations

2 review citations

Understanding the contributions of VPS35 and the retromer in neurodegenerative disease.
Williams et al. (2022)
1 more