6yly

Electron Microscopy
3.8Å resolution

pre-60S State NE2 (TAP-Flag-Nop53)

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 49-mer (preferred)
PDBe Complex ID:
PDB-CPX-216264 (preferred)
Entry contents:
46 distinct polypeptide molecules
3 distinct RNA molecules
Macromolecules (49 distinct):
Large ribosomal subunit protein uL2A Chain: A
Molecule details ›
Chain: A
Length: 254 amino acids
Theoretical weight: 27.46 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX45 (Residues: 1-254; Coverage: 100%)
Gene names: RPL2A, RPL5B, YFR031BC, YFR031C-A
Sequence domains:
Large ribosomal subunit protein uL15 Chain: a
Molecule details ›
Chain: a
Length: 149 amino acids
Theoretical weight: 16.76 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P02406 (Residues: 1-149; Coverage: 100%)
Gene names: CYH2, RPL28, YGL103W
Sequence domains: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Large ribosomal subunit protein uL3 Chain: B
Nucleolar GTP-binding protein 1 Chain: b
Large ribosomal subunit protein uL4A Chain: C
Large ribosomal subunit protein eL30 Chain: c
Large ribosomal subunit protein eL31A Chain: d
Large ribosomal subunit protein eL6A Chain: E
Large ribosomal subunit protein eL32 Chain: e
Large ribosomal subunit protein uL30A Chain: F
Large ribosomal subunit protein eL33A Chain: f
Large ribosomal subunit protein eL8A Chain: G
Large ribosomal subunit protein eL34A Chain: g
Bud site selection protein 20 Chain: I
Large ribosomal subunit protein uL6A Chain: H
Large ribosomal subunit protein uL29A Chain: h
Large ribosomal subunit protein eL36A Chain: i
Large ribosomal subunit protein eL37A Chain: j
Large ribosomal subunit protein eL38 Chain: k
Large ribosomal subunit protein eL13A Chain: L
Large ribosomal subunit protein eL39 Chain: l
Large ribosomal subunit protein eL14A Chain: M
Large ribosomal subunit protein eL43A Chain: p
Large ribosomal subunit protein eL15A Chain: N
Ribosome biogenesis protein RLP24 Chain: u
Large ribosomal subunit protein uL13A Chain: O
Large ribosomal subunit protein uL22A Chain: P
Large ribosomal subunit protein eL18A Chain: Q
Large ribosomal subunit protein eL19A Chain: R
Ribosome biogenesis protein NSA2 Chain: r
Large ribosomal subunit protein eL20A Chain: S
Large ribosomal subunit protein eL21A Chain: T
Large ribosomal subunit protein eL22A Chain: U
Large ribosomal subunit protein uL14A Chain: V
Ribosome assembly factor MRT4 Chain: W
Large ribosomal subunit protein uL23 Chain: X
Large ribosomal subunit protein uL24A Chain: Y
Eukaryotic translation initiation factor 6 Chain: y
Large ribosomal subunit protein eL27A Chain: Z
UPF0642 protein YBL028C Chain: z
Proteasome-interacting protein CIC1 Chain: K
Pescadillo homolog Chain: n
Ribosome biogenesis protein 15 Chain: o
Ribosome biogenesis protein NOP53 Chain: q
Ribosome biogenesis protein RLP7 Chain: t
Nuclear GTP-binding protein NUG1 Chain: s
25S ribosomal RNA Chain: 1
5.8S ribosomal RNA Chain: 3
ITS2 Chain: 6

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this EM entry.
Resolution: 3.8Å
Relevant EMDB volumes: EMD-10842