6ymw

Electron Microscopy
3.71Å resolution

Cryo-EM structure of yeast mitochondrial RNA polymerase transcription initiation complex

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero pentamer (preferred)
PDBe Complex ID:
PDB-CPX-120996 (preferred)
Entry contents:
2 distinct polypeptide molecules
2 distinct DNA molecules
1 distinct RNA molecule
Macromolecules (5 distinct):
Mitochondrial transcription factor 1 Chain: B
Molecule details ›
Chain: B
Length: 354 amino acids
Theoretical weight: 41.15 KDa
Source organism: Saccharomyces cerevisiae S288C
Expression system: Escherichia coli
UniProt:
  • Canonical: P14908 (Residues: 2-341; Coverage: 100%)
Gene names: MTF1, YM9959.10, YMR228W
Sequence domains: Ribosomal RNA adenine dimethylase
DNA-directed RNA polymerase, mitochondrial Chain: A
Molecule details ›
Chain: A
Length: 1262 amino acids
Theoretical weight: 143.28 KDa
Source organism: Saccharomyces cerevisiae S288C
Expression system: Escherichia coli
UniProt:
  • Canonical: P13433 (Residues: 100-1351; Coverage: 93%)
Gene names: RPO41, YFL036W
Sequence domains:
Chains: N Chain: N
Molecule details ›
Chain: N
Length: 33 nucleotides
Theoretical weight: 10.25 KDa
Chains: T Chain: T
Molecule details ›
Chain: T
Length: 33 nucleotides
Theoretical weight: 10.05 KDa
RNA (pppGpG) Chain: C
Molecule details ›
Chain: C
Length: 2 nucleotides
Theoretical weight: 805 Da

Ligands and Environments

2 bound ligands:
1 modified residue:

Experiments and Validation Details

Entry percentile scores
Resolution: 3.71Å
Relevant EMDB volumes: EMD-15662, EMD-10846
Expression system: Escherichia coli