› 6yro

X-ray diffraction
2.05Å resolution

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-124485 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Gram-positive cocci surface proteins LPxTG domain-containing protein Chains: A, B, C, D, E
Molecule details ›
Chains: A, B, C, D, E
Length: 223 amino acids
Theoretical weight: 25.35 KDa
Source organism: Streptococcus suis
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: G5DSS1 (Residues: 125-329; Coverage: 27%)
Gene names: ERS156295_00659, bag_1, sadP

Ligands and Environments

2 bound ligands:
Ligand GOL 7 x GOL
Ligand NA 3 x NA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: MAX IV BEAMLINE BioMAX
Spacegroup: C2
Unit cell:
a: 126.132Å b: 80.799Å c: 130.74Å
α: 90° β: 113.133° γ: 90°
R-values:
R R work R free
0.175 0.174 0.222
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

2 review citations

Structural Diversities of Lectins Binding to the Glycosphingolipid Gb3.
Siukstaite et al. (2021)
1 more

2 mentions without citation

Integrative overview of antibodies against SARS-CoV-2 and their possible applications in COVID-19 prophylaxis and treatment.
Valdez-Cruz et al. (2021)
1 more