6yxy

Electron Microscopy
3.1Å resolution

State B of the Trypanosoma brucei mitoribosomal large subunit assembly intermediate

Released:

Function and Biology Details

Reaction catalysed:
Peptidylproline (omega=180) = peptidylproline (omega=0)
Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero 83-mer (preferred)
PDBe Complex ID:
PDB-CPX-251186 (preferred)
Entry contents:
80 distinct polypeptide molecules
1 distinct RNA molecule
Macromolecules (81 distinct):
39S ribosomal protein L28, mitochondrial Chain: A1
Molecule details ›
Chain: A1
Length: 241 amino acids
Theoretical weight: 28.05 KDa
Source organism: Trypanosoma brucei brucei
Large ribosomal subunit protein uL29m Chain: A2
Molecule details ›
Chain: A2
Length: 471 amino acids
Theoretical weight: 54.05 KDa
Source organism: Trypanosoma brucei brucei
Ribosomal protein L30 ferredoxin-like fold domain-containing protein Chain: A3
bL32m Chain: A5
T. brucei spp.-specific protein Chain: A8
mL67 Chain: BA
GTP-binding protein, putative Chain: EA
mL68 Chain: BB
DEAD-box helicase, putative Chain: EB
Pseudouridylate synthase RPUSD4, mitochondrial Chain: EC
mL70 Chain: BD
TRUD domain-containing protein Chain: ED
Large ribosomal subunit protein uL3m Chain: AE
mL71 Chain: BE
tRNA/rRNA methyltransferase SpoU type domain-containing protein Chain: EE
UNK Chain: UE
Large ribosomal subunit protein uL4m Chain: AF
Tetratricopeptide repeat Chain: BF
tRNA/rRNA methyltransferase SpoU type domain-containing protein Chain: EF
mt-LAF7 Chain: EG
mL74 Chain: BH
mt-LAF8 Chain: EH
Ribosomal protein L9 domain-containing protein Chain: AI
Mitochondrial RNA binding complex 1 subunit Chain: BI
MALSU1 Chain: EI
UNK Chain: UI
Ribosomal protein S24/S35 mitochondrial conserved domain-containing protein Chain: BJ
L0R8F8 Chain: EJ
Ribosomal protein L11, putative Chain: AK
J domain-containing protein Chain: BK
Acyl carrier protein Chains: EK, ER
UNK Chain: UK
mL78 Chain: BL
mt-LAF12 Chain: EL
UNK Chain: UL
G domain-containing protein Chain: EM
UNK Chain: UM
50S ribosomal protein L13, putative Chain: AN
mL80 Chain: BN
T. brucei spp.-specific protein Chain: EN
uL14m Chain: AO
mL81 Chain: BO
T. brucei spp.-specific protein Chains: EO, EP
Large ribosomal subunit protein uL15/eL18 domain-containing protein Chain: AP
Peptidyl-prolyl cis-trans isomerase Chain: BQ
EngB-type G domain-containing protein Chain: EQ
50S ribosomal protein L17, putative Chain: AR
mL84 Chain: BR
mL85 Chain: BS
Fungal lipase-type domain-containing protein Chain: ES
bL19m Chain: AT
mL86 Chain: BT
mt-LAF19 Chain: ET
bL20m Chain: AU
T. brucei spp.-specific protein Chain: BU
mt-LAF20 Chain: EU
Large ribosomal subunit protein bL21m Chain: AV
mL88 Chain: BV
Ribosomal protein L22p/L17e Chain: AW
mL89 Chain: BW
Large ribosomal subunit protein uL23m Chain: AX
LIM zinc-binding domain-containing protein Chain: BX
UNK Chain: UX
KOW domain-containing protein Chain: AY
Peptidyl-prolyl cis-trans isomerase Chain: BZ
mL93 Chain: Ba
Rhodanese domain-containing protein Chain: Bb
mL95 Chain: Bc
mL41 Chain: Ae
mL42 Chain: Af
mL98 Chain: Bf
Large ribosomal subunit protein mL43 Chain: Ag
mL99 Chain: Bg
mL100 Chain: Bh
mL101 Chain: Bi
mL49 Chain: Al
mL52 Chain: Ao
mL53 Chain: Ap
T. brucei spp.-specific protein Chain: At
mL64 Chain: Av
12S ribosomal RNA Chain: AA

Ligands and Environments

Experiments and Validation Details

Entry percentile scores
Resolution: 3.1Å
Relevant EMDB volumes: EMD-11000