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CARDIOLIPIN

CDL model coordinates provided in the wwPDB chemical component dictionary
CARDIOLIPIN in PDB entry 6zkb, assembly 1, side view.
CARDIOLIPIN in PDB entry 6zkb, assembly 1, top view.
Formula: C81 H156 O17 P2
Molecular weight: 1464 Da
Charge: -2

Environment details NEW

CDL 403 bound to chain N
Ligands and residuesInteractions
 hydrophobic
negatively charged
aromatic
polar
cystein
water
positively charged
other
glycine
bound molecule
glycans (SNFG)
aromatic
clashes
covalent
electrostatic
metal hydrophobic
vdw
LYS16LEU19THR20THR23LEU27ILE34LEU37ASP45ARG60LEU63TYR64SER67PHE68PHE70VAL71LEU75THR324LEU325THR328LEU332LEU336LEU3393PE501

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The above 2D and 3D (Mol*) views of ligand interactions use quaternary structure derived from the PDB entry.
Please note:
  • Some chain IDs in the tooltip are followed by a number in square brackets. This number corresponds to the operation ID (mmCIF ‘oper_expression’) used to transform the chain.
  • The structure seen in Mol* (3D view) was protonated using ChimeraX.
  • Interactions were calculated using Arpeggio (see details for interaction types).
  • The colour scheme used is consistent with Clustal X.

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EBI resources (CDL)