6zm5

Electron Microscopy
2.89Å resolution

Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide

Released:
Source organism: Homo sapiens
Related structures: EMD-11278

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 94-mer (preferred)
PDBe Complex ID:
PDB-CPX-251711 (preferred)
Entry contents:
83 distinct polypeptide molecules
6 distinct RNA molecules
Macromolecules (89 distinct):
Large ribosomal subunit protein uL2m Chain: D
Molecule details ›
Chain: D
Length: 305 amino acids
Theoretical weight: 33.36 KDa
Source organism: Homo sapiens
UniProt:
  • Canonical: Q5T653 (Residues: 1-305; Coverage: 100%)
Gene names: CGI-22, MRPL2
Sequence domains:
Large ribosomal subunit protein uL3m Chain: E
Molecule details ›
Chain: E
Length: 348 amino acids
Theoretical weight: 38.69 KDa
Source organism: Homo sapiens
UniProt:
  • Canonical: P09001 (Residues: 1-348; Coverage: 100%)
Gene names: MRL3, MRPL3, RPML3
Sequence domains: Ribosomal protein L3
Large ribosomal subunit protein uL4m Chain: F
Large ribosomal subunit protein bL9m Chain: H
Large ribosomal subunit protein uL10m Chain: I
Large ribosomal subunit protein uL11m Chain: J
Large ribosomal subunit protein uL13m Chain: K
Large ribosomal subunit protein uL14m Chain: L
Large ribosomal subunit protein uL15m Chain: M
Large ribosomal subunit protein uL16m Chain: N
Large ribosomal subunit protein bL17m Chain: O
Large ribosomal subunit protein uL18m Chain: P
Large ribosomal subunit protein bL19m Chain: Q
Large ribosomal subunit protein bL20m Chain: R
Large ribosomal subunit protein bL21m Chain: S
Large ribosomal subunit protein uL22m Chain: T
Large ribosomal subunit protein uL23m Chain: U
Large ribosomal subunit protein uL24m Chain: V
Large ribosomal subunit protein bL27m Chain: W
Large ribosomal subunit protein bL28m Chain: X
Large ribosomal subunit protein uL29m Chain: Y
Large ribosomal subunit protein uL30m Chain: Z
Large ribosomal subunit protein bL32m Chain: 0
Large ribosomal subunit protein bL33m Chain: 1
Large ribosomal subunit protein bL34m Chain: 2
Large ribosomal subunit protein bL35m Chain: 3
Large ribosomal subunit protein bL36m Chain: 4
Large ribosomal subunit protein mL37 Chain: 5
Large ribosomal subunit protein mL38 Chain: 6
Large ribosomal subunit protein mL39 Chain: 7
Large ribosomal subunit protein mL40 Chain: 8
Large ribosomal subunit protein mL41 Chain: 9
Large ribosomal subunit protein mL42 Chain: a
Large ribosomal subunit protein mL43 Chain: b
Large ribosomal subunit protein mL44 Chain: c
Large ribosomal subunit protein mL45 Chain: d
Large ribosomal subunit protein mL46 Chain: e
Large ribosomal subunit protein mL48 Chain: f
Large ribosomal subunit protein mL49 Chain: g
Large ribosomal subunit protein mL50 Chain: h
Large ribosomal subunit protein mL51 Chain: i
Large ribosomal subunit protein mL52 Chain: j
Large ribosomal subunit protein mL53 Chain: k
Large ribosomal subunit protein mL54 Chain: l
Large ribosomal subunit protein mL55 Chain: m
Large ribosomal subunit protein mL63 Chain: o
Large ribosomal subunit protein mL62 Chain: p
Large ribosomal subunit protein mL64 Chain: q
Large ribosomal subunit protein mL66 Chain: r
Large ribosomal subunit protein mL65 Chain: s
Large ribosomal subunit protein bL12m Chains: t1, t2, t3, t4, t5, t6
Small ribosomal subunit protein uS2m Chain: AB
Small ribosomal subunit protein uS3m Chain: AC
Small ribosomal subunit protein uS5m Chain: AD
Small ribosomal subunit protein bS6m Chain: AE
Small ribosomal subunit protein uS7m Chain: AF
Small ribosomal subunit protein uS9m Chain: AG
Small ribosomal subunit protein uS10m Chain: AH
Small ribosomal subunit protein uS11m Chain: AI
Small ribosomal subunit protein uS12m Chain: AJ
Small ribosomal subunit protein uS14m Chain: AK
Small ribosomal subunit protein uS15m Chain: AL
Small ribosomal subunit protein bS16m Chain: AM
Small ribosomal subunit protein uS17m Chain: AN
Small ribosomal subunit protein mS40 Chain: AO
Small ribosomal subunit protein bS18m Chain: AP
Small ribosomal subunit protein bS21m Chain: AQ
Small ribosomal subunit protein mS22 Chain: AR
Small ribosomal subunit protein mS23 Chain: AS
Small ribosomal subunit protein mS25 Chain: AT
Small ribosomal subunit protein mS26 Chain: AU
Small ribosomal subunit protein mS27 Chain: AV
Small ribosomal subunit protein bS1m Chain: AW
Small ribosomal subunit protein mS29 Chain: AX
Small ribosomal subunit protein mS31 Chain: AY
Small ribosomal subunit protein mS33 Chain: AZ
Small ribosomal subunit protein mS34 Chain: A0
Small ribosomal subunit protein mS35 Chain: A1
Small ribosomal subunit protein mS37 Chain: A2
Small ribosomal subunit protein mS38 Chain: A3
Small ribosomal subunit protein mS39 Chain: A4
Mitochondrial inner membrane protein OXA1L Chain: u
Nascent polypeptide Chain: v
16S mitochondrial rRNA Chain: A
mitochondrial tRNAVal Chain: B
12S mitochondrial rRNA Chain: AA
A-site tRNA with aminoacylation Chain: w
P-site tRNA Chain: x
Messenger RNA Chain: y

Ligands and Environments

Experiments and Validation Details

Entry percentile scores
Resolution: 2.89Å
Relevant EMDB volumes: EMD-11278